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Index
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B
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F
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G
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Z
_
_abc_cache (ase_notebook.draw_elements.DrawGroup attribute)
_abc_negative_cache (ase_notebook.draw_elements.DrawGroup attribute)
_abc_negative_cache_version (ase_notebook.draw_elements.DrawGroup attribute)
_abc_registry (ase_notebook.draw_elements.DrawGroup attribute)
_add_element_properties() (ase_notebook.viewer.AseView method)
_bond_pairs_filter() (ase_notebook.configuration.ViewConfig method)
_hsl (ase_notebook.color.Color attribute)
_hue2rgb() (in module ase_notebook.color)
_initialise_elements() (ase_notebook.viewer.AseView method)
_ipython_display_() (ase_notebook.backend.threejs.RenderContainer method)
_protected_keys (ase_notebook.draw_elements.DrawElementsBase attribute)
(ase_notebook.draw_elements.DrawElementsSphere attribute)
_validate_canvas_crop() (ase_notebook.configuration.ViewConfig method)
_validate_h() (ase_notebook.configuration.MillerPlane method)
_validate_k() (ase_notebook.configuration.MillerPlane method)
_validate_l() (ase_notebook.configuration.MillerPlane method)
_validate_uc_dash_pattern() (ase_notebook.configuration.ViewConfig method)
A
add_labels() (in module ase_notebook.backend.threejs)
add_miller_plane() (ase_notebook.viewer.AseView method)
ase_decoder_hook() (in module ase_notebook.atoms_convert)
ase_notebook (module)
ase_notebook.atom_info (module)
ase_notebook.atoms_convert (module)
ase_notebook.attr_doc (module)
ase_notebook.backend (module)
ase_notebook.backend.gui (module)
ase_notebook.backend.svg (module)
ase_notebook.backend.threejs (module)
ase_notebook.color (module)
ase_notebook.configuration (module)
ase_notebook.data (module)
ase_notebook.draw_elements (module)
ase_notebook.draw_utils (module)
ase_notebook.viewer (module)
ASEEncoder (class in ase_notebook.atoms_convert)
AseView (class in ase_notebook.viewer)
atom_color_array (ase_notebook.configuration.ViewConfig attribute)
atom_color_by (ase_notebook.configuration.ViewConfig attribute)
atom_colormap (ase_notebook.configuration.ViewConfig attribute)
atom_colormap_range (ase_notebook.configuration.ViewConfig attribute)
atom_font_color (ase_notebook.configuration.ViewConfig attribute)
atom_font_size (ase_notebook.configuration.ViewConfig attribute)
atom_label_array (ase_notebook.configuration.ViewConfig attribute)
atom_label_by (ase_notebook.configuration.ViewConfig attribute)
atom_lighten_by_depth (ase_notebook.configuration.ViewConfig attribute)
atom_opacity (ase_notebook.configuration.ViewConfig attribute)
atom_show_label (ase_notebook.configuration.ViewConfig attribute)
atom_stroke_opacity (ase_notebook.configuration.ViewConfig attribute)
atom_stroke_width (ase_notebook.configuration.ViewConfig attribute)
AtomGui (class in ase_notebook.backend.gui)
AtomImages (class in ase_notebook.backend.gui)
autodoc() (in module ase_notebook.attr_doc)
axes_font_size (ase_notebook.configuration.ViewConfig attribute)
axes_length (ase_notebook.configuration.ViewConfig attribute)
axes_line_color (ase_notebook.configuration.ViewConfig attribute)
axes_offset (ase_notebook.configuration.ViewConfig attribute)
axes_uc (ase_notebook.configuration.ViewConfig attribute)
B
blue() (ase_notebook.color.Color property)
bond_array_name (ase_notebook.configuration.ViewConfig attribute)
bond_color_by (ase_notebook.configuration.ViewConfig attribute)
bond_colormap (ase_notebook.configuration.ViewConfig attribute)
bond_colormap_range (ase_notebook.configuration.ViewConfig attribute)
bond_opacity (ase_notebook.configuration.ViewConfig attribute)
bond_pairs_filter (ase_notebook.configuration.ViewConfig attribute)
bond_radii_scale (ase_notebook.configuration.ViewConfig attribute)
C
camera_fov (ase_notebook.configuration.ViewConfig attribute)
canvas_background_opacity (ase_notebook.configuration.ViewConfig attribute)
canvas_color_background (ase_notebook.configuration.ViewConfig attribute)
canvas_color_foreground (ase_notebook.configuration.ViewConfig attribute)
canvas_crop (ase_notebook.configuration.ViewConfig attribute)
canvas_size (ase_notebook.configuration.ViewConfig attribute)
cart2polar() (in module ase_notebook.backend.svg)
Color (class in ase_notebook.color)
compute_bonds() (in module ase_notebook.draw_utils)
compute_projection() (in module ase_notebook.draw_utils)
concatenate_svgs() (in module ase_notebook.backend.svg)
config() (ase_notebook.viewer.AseView property)
ContainerHEX (class in ase_notebook.color)
ContainerHSL (class in ase_notebook.color)
ContainerRGB (class in ase_notebook.color)
convert_to_atoms() (in module ase_notebook.atoms_convert)
convert_to_miller_dicts() (in module ase_notebook.configuration)
copy() (ase_notebook.viewer.AseView method)
create_arc_element() (in module ase_notebook.backend.svg)
create_arrow_texture() (in module ase_notebook.backend.threejs)
create_axes_elements() (in module ase_notebook.backend.svg)
create_formula() (in module ase_notebook.atom_info)
create_info_lines() (in module ase_notebook.atom_info)
create_ndarray() (in module ase_notebook.atoms_convert)
create_svg_document() (in module ase_notebook.backend.svg)
create_svg_document_with_light() (in module ase_notebook.backend.svg)
create_world_axes() (in module ase_notebook.backend.threejs)
D
default() (ase_notebook.atoms_convert.ASEEncoder method)
deserialize_atoms() (in module ase_notebook.atoms_convert)
draw() (ase_notebook.backend.gui.AtomGui method)
draw_arc() (in module ase_notebook.backend.gui)
draw_arrow() (in module ase_notebook.backend.gui)
draw_axes() (in module ase_notebook.backend.gui)
draw_circle() (in module ase_notebook.backend.gui)
draw_elements() (in module ase_notebook.backend.gui)
DrawElementsBase (class in ase_notebook.draw_elements)
DrawElementsLine (class in ase_notebook.draw_elements)
DrawElementsPoly (class in ase_notebook.draw_elements)
DrawElementsSphere (class in ase_notebook.draw_elements)
DrawGroup (class in ase_notebook.draw_elements)
E
Element (class in ase_notebook.draw_elements)
element_colors (ase_notebook.configuration.ViewConfig attribute)
element_properties() (ase_notebook.draw_elements.DrawElementsBase property)
element_radii (ase_notebook.configuration.ViewConfig attribute)
etype (ase_notebook.draw_elements.DrawElementsBase attribute)
(ase_notebook.draw_elements.DrawElementsLine attribute)
(ase_notebook.draw_elements.DrawElementsPoly attribute)
(ase_notebook.draw_elements.DrawElementsSphere attribute)
F
fill_color (ase_notebook.configuration.MillerPlane attribute)
fill_opacity (ase_notebook.configuration.MillerPlane attribute)
filter_bond_indices() (in module ase_notebook.draw_utils)
force_vector_scale (ase_notebook.configuration.ViewConfig attribute)
G
gather_3d_objects() (in module ase_notebook.backend.threejs)
generate_3js_render() (in module ase_notebook.backend.threejs)
generate_svg_elements() (in module ase_notebook.backend.svg)
get() (ase_notebook.draw_elements.Element method)
get_all_coordinates() (ase_notebook.draw_elements.DrawGroup method)
get_all_positions() (ase_notebook.draw_elements.DrawGroup method)
get_atom_colors() (ase_notebook.viewer.AseView method)
get_atom_labels() (ase_notebook.viewer.AseView method)
get_atom_radii() (ase_notebook.viewer.AseView method)
get_cell_coordinates() (in module ase_notebook.draw_utils)
get_config_as_dict() (ase_notebook.viewer.AseView method)
get_element_colors() (ase_notebook.viewer.AseView method)
get_element_radii() (ase_notebook.viewer.AseView method)
get_elements_property() (ase_notebook.draw_elements.DrawElementsBase method)
get_example_atoms() (in module ase_notebook.data)
get_input_as_dict() (ase_notebook.viewer.AseView method)
get_max_zposition() (ase_notebook.draw_elements.DrawElementsBase method)
(ase_notebook.draw_elements.DrawElementsLine method)
(ase_notebook.draw_elements.DrawElementsPoly method)
(ase_notebook.draw_elements.DrawElementsSphere method)
get_miller_coordinates() (in module ase_notebook.draw_utils)
get_position_range() (ase_notebook.draw_elements.DrawGroup method)
get_rotation_matrix() (in module ase_notebook.draw_utils)
get_svg_string() (in module ase_notebook.backend.svg)
ghost_cross_out (ase_notebook.configuration.ViewConfig attribute)
ghost_lighten (ase_notebook.configuration.ViewConfig attribute)
ghost_opacity (ase_notebook.configuration.ViewConfig attribute)
ghost_show_label (ase_notebook.configuration.ViewConfig attribute)
ghost_stroke_opacity (ase_notebook.configuration.ViewConfig attribute)
ghost_stroke_width (ase_notebook.configuration.ViewConfig attribute)
green() (ase_notebook.color.Color property)
group_properties() (ase_notebook.draw_elements.DrawElementsBase property)
gui_swap_mouse (ase_notebook.configuration.ViewConfig attribute)
H
h (ase_notebook.configuration.MillerPlane attribute)
hex() (ase_notebook.color.Color property)
hex2hsl() (in module ase_notebook.color)
hex2rgb() (in module ase_notebook.color)
hex2web() (in module ase_notebook.color)
hex_l() (ase_notebook.color.Color property)
hsl() (ase_notebook.color.Color property)
hsl2hex() (in module ase_notebook.color)
hsl2rgb() (in module ase_notebook.color)
hsl2web() (in module ase_notebook.color)
hsl_equivalence() (in module ase_notebook.color)
hue() (ase_notebook.color.Color property)
I
in_range() (in module ase_notebook.configuration)
initialise_element_groups() (in module ase_notebook.draw_utils)
is_html_color() (in module ase_notebook.configuration)
iterable_length() (in module ase_notebook.configuration)
K
k (ase_notebook.configuration.MillerPlane attribute)
L
l (ase_notebook.configuration.MillerPlane attribute)
launch_gui_exec() (in module ase_notebook.viewer)
launch_gui_subprocess() (ase_notebook.viewer.AseView method)
lighten_webcolor() (in module ase_notebook.color)
load_data_file() (in module ase_notebook.data)
luminance() (ase_notebook.color.Color property)
M
make_basic_gui() (in module ase_notebook.backend.threejs)
make_gui() (ase_notebook.viewer.AseView method)
make_render() (ase_notebook.viewer.AseView method)
make_svg() (ase_notebook.viewer.AseView method)
miller_as_lines (ase_notebook.configuration.ViewConfig attribute)
miller_planes (ase_notebook.configuration.ViewConfig attribute)
MillerPlane (class in ase_notebook.configuration)
move() (ase_notebook.backend.gui.AtomGui method)
N
numpyfy() (in module ase_notebook.atoms_convert)
P
polar2cart() (in module ase_notebook.backend.svg)
R
radii_scale (ase_notebook.configuration.ViewConfig attribute)
red() (ase_notebook.color.Color property)
release() (ase_notebook.backend.gui.AtomGui method)
RenderContainer (class in ase_notebook.backend.threejs)
rgb() (ase_notebook.color.Color property)
rgb2hex() (in module ase_notebook.color)
rgb2hsl() (in module ase_notebook.color)
rgb2web() (in module ase_notebook.color)
rgb_equivalence() (in module ase_notebook.color)
rotations (ase_notebook.configuration.ViewConfig attribute)
S
saturation() (ase_notebook.color.Color property)
scaled_radii() (ase_notebook.draw_elements.DrawElementsSphere property)
serialize_atoms() (in module ase_notebook.atoms_convert)
set_atoms() (ase_notebook.backend.gui.AtomGui method)
set_property() (ase_notebook.draw_elements.DrawElementsBase method)
set_property_many() (ase_notebook.draw_elements.DrawElementsBase method)
show_axes (ase_notebook.configuration.ViewConfig attribute)
show_bonds (ase_notebook.configuration.ViewConfig attribute)
show_miller_planes (ase_notebook.configuration.ViewConfig attribute)
show_uc_repeats (ase_notebook.configuration.ViewConfig attribute)
show_unit_cell (ase_notebook.configuration.ViewConfig attribute)
showing_millers() (ase_notebook.backend.gui.AtomGui method)
string_to_compose() (in module ase_notebook.backend.svg)
stroke_color (ase_notebook.configuration.MillerPlane attribute)
stroke_opacity (ase_notebook.configuration.MillerPlane attribute)
stroke_width (ase_notebook.configuration.MillerPlane attribute)
svg_to_pdf() (in module ase_notebook.backend.svg)
T
tessellate_rectangles() (in module ase_notebook.backend.svg)
triangle_normal() (in module ase_notebook.draw_utils)
try_int() (in module ase_notebook.atoms_convert)
type_to_sphinx() (in module ase_notebook.attr_doc)
U
uc_color (ase_notebook.configuration.ViewConfig attribute)
uc_dash_pattern (ase_notebook.configuration.ViewConfig attribute)
unstack_coordinates() (ase_notebook.draw_elements.DrawElementsBase method)
(ase_notebook.draw_elements.DrawElementsLine method)
(ase_notebook.draw_elements.DrawElementsPoly method)
(ase_notebook.draw_elements.DrawElementsSphere method)
unstack_positions() (ase_notebook.draw_elements.DrawElementsBase method)
(ase_notebook.draw_elements.DrawElementsLine method)
(ase_notebook.draw_elements.DrawElementsPoly method)
(ase_notebook.draw_elements.DrawElementsSphere method)
update_positions() (ase_notebook.draw_elements.DrawElementsBase method)
(ase_notebook.draw_elements.DrawElementsLine method)
(ase_notebook.draw_elements.DrawElementsPoly method)
(ase_notebook.draw_elements.DrawElementsSphere method)
(ase_notebook.draw_elements.DrawGroup method)
V
values_to_colors() (ase_notebook.viewer.AseView static method)
velocity_vector_scale (ase_notebook.configuration.ViewConfig attribute)
ViewConfig (class in ase_notebook.configuration)
W
web() (ase_notebook.color.Color property)
web2hex() (in module ase_notebook.color)
web2hsl() (in module ase_notebook.color)
web2rgb() (in module ase_notebook.color)
Y
yield_zorder() (ase_notebook.draw_elements.DrawGroup method)
Z
zoom (ase_notebook.configuration.ViewConfig attribute)
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